Publications

Publications | AdaptOR2021

Methodological development on the challenge dataset from the organisers (we did not participate in the challenge):

Mutually improved endoscopic image synthesis and landmark detection in unpaired image-to-image translation


14 Jul 2021
Lalith Sharan, Gabriele Romano, Sven Koehler, Halvar Kelm, Matthias Karck, Raffaele De Simone, Sandy Engelhardt

Abstract:

The CycleGAN framework allows for unsupervised image-to-image translation of unpaired data. In a scenario of surgical training on a physical surgical simulator, this method can be used to transform endoscopic images of phantoms into images which more closely resemble the intra-operative appearance of the same surgical target structure. This can be viewed as a novel augmented reality approach, which we coined Hyperrealism in previous work. In this use case, it is of paramount importance to display objects like needles, sutures or instruments consistent in both domains while altering the style to a more tissue-like appearance. Segmentation of these objects would allow for a direct transfer, however, contouring of these, partly tiny and thin foreground objects is cumbersome and perhaps inaccurate. Instead, we propose to use landmark detection on the points when sutures pass into the tissue. This objective is directly incorporated into a CycleGAN framework by treating the performance of pre-trained detector models as an additional optimization goal. We show that a task defined on these sparse landmark labels improves consistency of synthesis by the generator network in both domains. Comparing a baseline CycleGAN architecture to our proposed extension (DetCycleGAN), mean precision (PPV) improved by +61.32, mean sensitivity (TPR) by +37.91, and mean F1 score by +0.4743. Furthermore, it could be shown that by dataset fusion, generated intra-operative images can be leveraged as additional training data for the detection network itself. The data is released within the scope of the AdaptOR MICCAI Challenge 2021 at https://adaptor2021.github.io/, and code at https://github.com/Cardio-AI/detcyclegan_pytorch. DOI: 10.1109/JBHI.2021.3099858. The link to the IEEE Early access article can be found here: https://ieeexplore.ieee.org/document/9496194 , and the link to the preprint can be found here:https://arxiv.org/abs/2107.06941

Bibtex citation:

@ARTICLE{9496194,
  author={Sharan, Lalith and Romano, Gabriele and Koehler, Sven and Kelm, Halvar and Karck, Matthias and De Simone, Raffaele and Engelhardt, Sandy},
  journal={IEEE Journal of Biomedical and Health Informatics},
  title={Mutually improved endoscopic image synthesis and landmark detection in unpaired image-to-image translation},
  year={2021},
  volume={},
  number={},
  pages={1-1},
  doi={10.1109/JBHI.2021.3099858}}
}